Davenport Lab

2019

Amariuta T, Luo y, Gazal S, Davenport EE, van de Geijn B, Kazuyoshi I, Westra H-J, Teslovich N, Okada Y, Yamamoto K, RACI Consortium, GARNET Consortium, Price A and Raychaudhuri S.
IMPACT: Genomic annotation of cell-state-specific regulatory elements inferred from the epigenome of bound transcription factors
American Journal of Human Genetics 104, 879-895

Davenport EE, Amariuta T, Gutierrez-Arcelus M, Slowikowski K, Westra H-J, Luo Y, Shen C, Rao DA, Zhang Y, Pearson S, von Schack D, Beebe JS, Bing N, John S, Vincent MS, Zhang B and Raychaudhuri S.
Discovering in vivo cytokine eQTL interactions from a lupus clinical trial
Genome Biology 19, 168

Sweeney TE, Perumal TM, …Davenport EE… Khatri P, Tsalik EL, Mangravite LM and Langley RJ
A community approach to mortality prediction in sepsis via gene expression analysis
Nature Communications 9, 694

Scicluna BP, van Vught LA, Zwinderman AH, Wiewel MA, Davenport EE, Burnham KL, Nürnberg P, Schultz MJ, Horn J, Cremer OL, Bonten MJ, Hinds CJ, Wong HR, Knight JC and van der Poll T
Classification of patients with sepsis according to blood genomic endotype: a prospective cohort study
The Lancet Respiratory Medicine 5, 816-826

Burnham KL, Davenport EE, Radhakrishnan J, Humburg P, Gordon AC, Hutton P, Svoren-Jabalera E, Garrard C, Hill AVS, Hinds CJ and Knight JC
Shared and Distinct Aspects of the Sepsis Transcriptomic Response to Fecal Peritonitis and Pneumonia
American Journal of Respiratory And Critical Care Medicine 196, 328-339

Davenport EE, Burnham KL, Radhakrishnan J, Humburg P, Hutton P, Mills TC, Rautanen A, Gordon AC, Garrard C, Hill AVS, Hinds CJ and Knight JC
Genomic landscape of the individual host response and outcomes in sepsis: a prospective cohort study
The Lancet Respiratory Medicine 4, 259-271

Dhalla F, Fox H, Davenport EE, Sadler R, Anzilotti C, van Schouwenburg PA, Ferry B, Chapel H, Knight JC and Patel S
Chronic Mucocutaneous Candidiasis: characterization of a family with STAT1 gain-of-function and development of an ex vivo assay for Th17 dysfunction of diagnostic utility
Clinical and Experimental Immunology 184, 216-227

van Schouwenburg PA¹, Davenport EE¹, Kienzler A-K, Marwah I, Wright B, Lucas M, Malinasuskas T, Martin HC, WGS500 Consortium, Lockstone HE, Cazier J-B, Chapel HM, Knight JC and Patel SY
Application of whole genome and RNA sequencing to investigate the genomic landscape of common variable immunodeficiency
Clinical Immunology 160, 301-314

Taylor JC, Martin HC, …Davenport EE… Donnelly P and McVean G
Factors influencing success of clinical genome sequencing across a broad spectrum of disorders
Nature Genetics 47, 717-726

Davenport EE¹, Antrobus RD¹, Lillie PJ, Gilbert S and Knight JC
Transcriptomic profiling facilitates classification of response to influenza challenge
Journal Molecular Medicine 93, 105-114

Fairfax BP, Davenport EE, Makino S, Hill AVS, Vannberg FO, Knight JC
A common haplotype of the tumour necrosis factor receptor 2 gene modulates endotoxin tolerance
Journal of Immunology 186, 3058-3065